GraSPy
0.0.3
Install
Install the released version
Python package dependencies
Hardware requirements
OS Requirements
Testing
Tutorial
Models
Random Graph Models
Simulations
Erdos-Renyi (ER) Model
Stochastic Block Model (SBM)
Random Dot Product Graph (RDPG) Model
Embedding
Adjacency Spectral Embed
Embedding Multiple Graphs
Inference
Latent Position Two-Graph Testing
Latent Distribution Two-Graph Testing
Plotting
Heatmap: Visualizing a Graph
Gridplot: Visualize Multiple Graphs
Pairplot: Visualizing High Dimensional Data
Reference
Simulations
Models
Erdos-Reyni models
Stochastic block models
Latent position models
Embedding
Decomposition
Single graph embedding
Multiple graph embedding
Dissimilarity graph embedding
Clustering
K-Means Clustering
Gaussian Mixture Models Clustering
Inference
Two-graph hypothesis testing
Plotting
Heatmap
Gridplot
Pairplot
Degreeplot
Edgeplot
Screeplot
Datasets
Drosophila larval mushroom body
Utility
Transformations
Connected Components
IO
Pipeline
Multigraph Embeddings
Contributing to GraSPy
Submitting a bug report or a feature request
How to make a good bug report
Contributing Code
Pull Request Checklist
Guidelines
Coding Guidelines
Docstring Guidelines
Release Log
GraSPy 0.0.3
Release notes
GraSPy 0.0.2
Release notes
GraSPy 0.0.1
Release notes
License
Useful Links
GraSPy @ GitHub
GraSPy @ PyPI
Issue Tracker
GraSPy
Docs
»
Index
Index
A
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B
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C
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D
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E
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F
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G
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H
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I
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K
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L
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M
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O
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P
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R
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S
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T
A
AdjacencySpectralEmbed (class in graspy.embed)
augment_diagonal() (in module graspy.utils)
B
bic() (graspy.models.DCEREstimator method)
(graspy.models.DCSBMEstimator method)
(graspy.models.EREstimator method)
(graspy.models.RDPGEstimator method)
(graspy.models.SBMEstimator method)
C
ClassicalMDS (class in graspy.embed)
D
DCEREstimator (class in graspy.models)
DCSBMEstimator (class in graspy.models)
degreeplot() (in module graspy.plot)
E
edgeplot() (in module graspy.plot)
er_nm() (in module graspy.simulations)
er_np() (in module graspy.simulations)
EREstimator (class in graspy.models)
F
fit() (graspy.cluster.GaussianCluster method)
(graspy.cluster.KMeansCluster method)
(graspy.embed.AdjacencySpectralEmbed method)
(graspy.embed.ClassicalMDS method)
(graspy.embed.LaplacianSpectralEmbed method)
(graspy.embed.MultipleASE method)
(graspy.embed.OmnibusEmbed method)
(graspy.inference.LatentDistributionTest method)
(graspy.inference.LatentPositionTest method)
(graspy.models.DCEREstimator method)
(graspy.models.DCSBMEstimator method)
(graspy.models.EREstimator method)
(graspy.models.RDPGEstimator method)
(graspy.models.SBMEstimator method)
(graspy.pipeline.mug2vec method)
fit_predict() (graspy.cluster.GaussianCluster method)
(graspy.cluster.KMeansCluster method)
fit_transform() (graspy.embed.AdjacencySpectralEmbed method)
(graspy.embed.ClassicalMDS method)
(graspy.embed.LaplacianSpectralEmbed method)
(graspy.embed.MultipleASE method)
(graspy.embed.OmnibusEmbed method)
(graspy.pipeline.mug2vec method)
G
GaussianCluster (class in graspy.cluster)
get_lcc() (in module graspy.utils)
get_multigraph_union_lcc() (in module graspy.utils)
get_params() (graspy.cluster.GaussianCluster method)
(graspy.cluster.KMeansCluster method)
(graspy.embed.AdjacencySpectralEmbed method)
(graspy.embed.ClassicalMDS method)
(graspy.embed.LaplacianSpectralEmbed method)
(graspy.embed.MultipleASE method)
(graspy.embed.OmnibusEmbed method)
(graspy.inference.LatentDistributionTest method)
(graspy.inference.LatentPositionTest method)
(graspy.models.DCEREstimator method)
(graspy.models.DCSBMEstimator method)
(graspy.models.EREstimator method)
(graspy.models.RDPGEstimator method)
(graspy.models.SBMEstimator method)
(graspy.pipeline.mug2vec method)
gridplot() (in module graspy.plot)
H
heatmap() (in module graspy.plot)
I
import_edgelist() (in module graspy.utils)
import_graph() (in module graspy.utils)
is_fully_connected() (in module graspy.utils)
K
KMeansCluster (class in graspy.cluster)
L
LaplacianSpectralEmbed (class in graspy.embed)
LatentDistributionTest (class in graspy.inference)
LatentPositionTest (class in graspy.inference)
load_drosophila_left() (in module graspy.datasets)
load_drosophila_right() (in module graspy.datasets)
M
mse() (graspy.models.DCEREstimator method)
(graspy.models.DCSBMEstimator method)
(graspy.models.EREstimator method)
(graspy.models.RDPGEstimator method)
(graspy.models.SBMEstimator method)
mug2vec (class in graspy.pipeline)
MultipleASE (class in graspy.embed)
O
OmnibusEmbed (class in graspy.embed)
P
pairplot() (in module graspy.plot)
pass_to_ranks() (in module graspy.utils)
predict() (graspy.cluster.GaussianCluster method)
(graspy.cluster.KMeansCluster method)
R
rdpg() (in module graspy.simulations)
RDPGEstimator (class in graspy.models)
remove_loops() (in module graspy.utils)
S
sample() (graspy.models.DCEREstimator method)
(graspy.models.DCSBMEstimator method)
(graspy.models.EREstimator method)
(graspy.models.RDPGEstimator method)
(graspy.models.SBMEstimator method)
sbm() (in module graspy.simulations)
SBMEstimator (class in graspy.models)
score() (graspy.models.DCEREstimator method)
(graspy.models.DCSBMEstimator method)
(graspy.models.EREstimator method)
(graspy.models.RDPGEstimator method)
(graspy.models.SBMEstimator method)
score_samples() (graspy.models.DCEREstimator method)
(graspy.models.DCSBMEstimator method)
(graspy.models.EREstimator method)
(graspy.models.RDPGEstimator method)
(graspy.models.SBMEstimator method)
screeplot() (in module graspy.plot)
select_dimension() (in module graspy.embed)
selectSVD() (in module graspy.embed)
set_params() (graspy.cluster.GaussianCluster method)
(graspy.cluster.KMeansCluster method)
(graspy.embed.AdjacencySpectralEmbed method)
(graspy.embed.ClassicalMDS method)
(graspy.embed.LaplacianSpectralEmbed method)
(graspy.embed.MultipleASE method)
(graspy.embed.OmnibusEmbed method)
(graspy.inference.LatentDistributionTest method)
(graspy.inference.LatentPositionTest method)
(graspy.models.DCEREstimator method)
(graspy.models.DCSBMEstimator method)
(graspy.models.EREstimator method)
(graspy.models.RDPGEstimator method)
(graspy.models.SBMEstimator method)
(graspy.pipeline.mug2vec method)
symmetrize() (in module graspy.utils)
T
to_laplace() (in module graspy.utils)